HL_4V4Z_096

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Z_096 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.2494

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V4Z|1|BA|C|2471
4V4Z|1|BA|G|2472
4V4Z|1|BA|U|2473
4V4Z|1|BA|C|2474
4V4Z|1|BA|C|2475
4V4Z|1|BA|A|2476
4V4Z|1|BA|C|2477
4V4Z|1|BA|A|2478
4V4Z|1|BA|G|2479

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B8

50S RIBOSOMAL PROTEIN L36