HL_4V50_033

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

GCUCAUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V50_033 not in the Motif Atlas

Geometric match to HL_4V50_137

Geometric discrepancy: 0.0052

The information below is about HL_4V50_137

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

4V50|1|AW|G|31
4V50|1|AW|C|32
4V50|1|AW|U|33
4V50|1|AW|C|34
4V50|1|AW|A|35
4V50|1|AW|U|36
4V50|1|AW|A|37
4V50|1|AW|A|38
4V50|1|AW|C|39

Current chains

Chain AW

PHE TRNA (UNMODIFIED BASES)

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AI

30S ribosomal protein S9

Chain AX

MRNA