HL_4V50_039

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

4V50|1|BB|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V50_039 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.2824

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V50|1|BB|U|137
4V50|1|BB|U|138
4V50|1|BB|U|139
4V50|1|BB|C|140
4V50|1|BB|G|141
4V50|1|BB|A|142

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BT

50S ribosomal protein L23