HL_4V50_060

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

GCAACAACC

Length

9 nucleotides

Bulged bases

4V50|1|BB|A|878

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V50_060 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3066

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

4V50|1|BB|G|875
4V50|1|BB|C|876
4V50|1|BB|A|877
4V50|1|BB|A|878
4V50|1|BB|C|898
4V50|1|BB|A|899
4V50|1|BB|A|900
4V50|1|BB|C|901
4V50|1|BB|C|902

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BM

50S ribosomal protein L16