HL_4V50_071

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

4V50|1|BB|A|1453, 4V50|1|BB|G|1459, 4V50|1|BB|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V50_071 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2651

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

4V50|1|BB|G|1450
4V50|1|BB|C|1451
4V50|1|BB|G|1452
4V50|1|BB|A|1453
4V50|1|BB|C|1454
4V50|1|BB|G|1455
4V50|1|BB|G|1456
4V50|1|BB|U|1457
4V50|1|BB|U|1458
4V50|1|BB|G|1459
4V50|1|BB|U|1460
4V50|1|BB|C|1461

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BN

50S ribosomal protein L17