HL_4V50_148

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

4V50|1|DB|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V50_148 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1242

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

4V50|1|DB|C|305
4V50|1|DB|U|306
4V50|1|DB|G|307
4V50|1|DB|G|308
4V50|1|DB|A|309
4V50|1|DB|A|310
4V50|1|DB|A|311
4V50|1|DB|G|312

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain DU

50S ribosomal protein L24