HL_4V51_009

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

4V51|1|AA|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V51_009 not in the Motif Atlas

Homologous match to HL_6CZR_080

Geometric discrepancy: 0.2681

The information below is about HL_6CZR_080

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

58

Unit IDs

4V51|1|AA|C|342
4V51|1|AA|U|343
4V51|1|AA|A|344
4V51|1|AA|C|345
4V51|1|AA|G|346
4V51|1|AA|G|347

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain BO

50S RIBOSOMAL PROTEIN L14

Chain BT

50S RIBOSOMAL PROTEIN L19