HL_4V51_054

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGGGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V51_054 not in the Motif Atlas

Homologous match to HL_4WF9_016

Geometric discrepancy: 0.1205

The information below is about HL_4WF9_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V51|1|BA|C|487
4V51|1|BA|G|488
4V51|1|BA|G|489
4V51|1|BA|G|491
4V51|1|BA|A|492
4V51|1|BA|G|493

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BW

50S RIBOSOMAL PROTEIN L22