HL_4V51_177

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGGAUGACC

Length

9 nucleotides

Bulged bases

4V51|1|DA|A|1174

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V51_177 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.2469

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V51|1|DA|G|1170
4V51|1|DA|G|1171
4V51|1|DA|G|1173
4V51|1|DA|A|1174
4V51|1|DA|U|1175
4V51|1|DA|G|1176
4V51|1|DA|A|1177
4V51|1|DA|C|1178
4V51|1|DA|C|1179

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DV

50S RIBOSOMAL PROTEIN L21