HL_4V51_206

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

4V51|1|DA|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V51_206 not in the Motif Atlas

Homologous match to HL_4WF9_055

Geometric discrepancy: 0.1429

The information below is about HL_4WF9_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V51|1|DA|C|2404
4V51|1|DA|G|2405
4V51|1|DA|U|2406
4V51|1|DA|G|2407
4V51|1|DA|U|2408
4V51|1|DA|G|2409
4V51|1|DA|G|2410
4V51|1|DA|A|2411
4V51|1|DA|A|2412
4V51|1|DA|G|2413

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D1

50S RIBOSOMAL PROTEIN L28

Chain DP

50S RIBOSOMAL PROTEIN L15