HL_4V51_224

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGUCUCC

Length

7 nucleotides

Bulged bases

4V51|1|AA|U|839, 4V51|1|AA|U|841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V51_224 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3163

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4V51|1|AA|G|837
4V51|1|AA|G|838
4V51|1|AA|U|839
4V51|1|AA|C|840
4V51|1|AA|U|841
4V51|1|AA|C|848
4V51|1|AA|C|849

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S RIBOSOMAL PROTEIN S2

Chain AR

30S RIBOSOMAL PROTEIN S18