HL_4V51_249

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCGAAGACAGCCAGUCGAGU

Length

20 nucleotides

Bulged bases

4V51|1|DA|C|1043, 4V51|1|DA|G|1044, 4V51|1|DA|A|1046, 4V51|1|DA|C|1049, 4V51|1|DA|C|1053, 4V51|1|DA|A|1111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V51|1|DA|G|1042
4V51|1|DA|C|1043
4V51|1|DA|G|1044
4V51|1|DA|A|1045
4V51|1|DA|A|1046
4V51|1|DA|G|1047
4V51|1|DA|A|1048
4V51|1|DA|C|1049
4V51|1|DA|A|1050
4V51|1|DA|G|1051
4V51|1|DA|C|1052
4V51|1|DA|C|1053
4V51|1|DA|A|1054
4V51|1|DA|G|1107
4V51|1|DA|U|1108
4V51|1|DA|C|1109
4V51|1|DA|G|1110
4V51|1|DA|A|1111
4V51|1|DA|G|1112
4V51|1|DA|U|1113

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DH

50S RIBOSOMAL PROTEIN L6

Chain DZ

50S RIBOSOMAL PROTEIN L25