HL_4V52_005

3D structure

PDB id

4V52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4V52|1|AA|U|209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V52_005 not in the Motif Atlas

Homologous match to HL_5J7L_005

Geometric discrepancy: 0.467

The information below is about HL_5J7L_005

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V52|1|AA|C|207
4V52|1|AA|U|208
4V52|1|AA|U|209
4V52|1|AA|C|210
4V52|1|AA|G|211
4V52|1|AA|G|212

Current chains

Chain AA

16S rRNA

Nearby chains