HL_4V52_070

3D structure

PDB id

4V52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

GGCGACGGUUGUCC

Length

14 nucleotides

Bulged bases

4V52|1|BB|A|1453, 4V52|1|BB|G|1459, 4V52|1|BB|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V52_070 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.107

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4V52|1|BB|G|1449
4V52|1|BB|G|1450
4V52|1|BB|C|1451
4V52|1|BB|G|1452
4V52|1|BB|A|1453
4V52|1|BB|C|1454
4V52|1|BB|G|1455
4V52|1|BB|G|1456
4V52|1|BB|U|1457
4V52|1|BB|U|1458
4V52|1|BB|G|1459
4V52|1|BB|U|1460
4V52|1|BB|C|1461
4V52|1|BB|C|1462

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BN

50S ribosomal protein L17