HL_4V52_130

3D structure

PDB id

4V52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

4V52|1|CA|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V52_130 not in the Motif Atlas

Homologous match to HL_4LFB_027

Geometric discrepancy: 0.2983

The information below is about HL_4LFB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4V52|1|CA|U|1165
4V52|1|CA|G|1166
4V52|1|CA|A|1167
4V52|1|CA|U|1168
4V52|1|CA|A|1169
4V52|1|CA|A|1170
4V52|1|CA|A|1171

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CB

30S ribosomal protein S2