HL_4V52_188

3D structure

PDB id

4V52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V52_188 not in the Motif Atlas

Geometric match to HL_1FIR_001

Geometric discrepancy: 0.3999

The information below is about HL_1FIR_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

18

Unit IDs

4V52|1|DB|A|2142
4V52|1|DB|C|2143
4V52|1|DB|G|2144
4V52|1|DB|C|2145
4V52|1|DB|C|2146
4V52|1|DB|A|2147
4V52|1|DB|G|2148
4V52|1|DB|U|2149

Current chains

Chain DB

23S rRNA

Nearby chains

Chain CK

30S ribosomal protein S11