HL_4V52_192

3D structure

PDB id

4V52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V52_192 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.2647

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V52|1|DB|G|2303
4V52|1|DB|G|2304
4V52|1|DB|U|2305
4V52|1|DB|C|2306
4V52|1|DB|G|2307
4V52|1|DB|G|2308
4V52|1|DB|A|2309
4V52|1|DB|C|2310
4V52|1|DB|A|2311
4V52|1|DB|U|2312
4V52|1|DB|C|2313

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DA

5S ribosomal RNA; 5S rRNA

Chain DF

50S ribosomal protein L5