HL_4V53_032

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V53_032 not in the Motif Atlas

Homologous match to HL_4LFB_032

Geometric discrepancy: 0.0888

The information below is about HL_4LFB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4V53|1|AA|G|1515
4V53|1|AA|G|1516
4V53|1|AA|G|1517
4V53|1|AA|A|1518
4V53|1|AA|A|1519
4V53|1|AA|C|1520

Current chains

Chain AA

16S rRNA

Nearby chains

Chain BB

Large subunit ribosomal RNA; LSU rRNA