HL_4V53_040

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

4V53|1|BB|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V53_040 not in the Motif Atlas

Geometric match to HL_5J7L_139

Geometric discrepancy: 0.1087

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V53|1|BB|G|194
4V53|1|BB|A|195
4V53|1|BB|A|196
4V53|1|BB|A|197
4V53|1|BB|C|198
4V53|1|BB|A|199
4V53|1|BB|U|200
4V53|1|BB|C|201

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BL

50S ribosomal protein L15

Chain BZ

50S ribosomal protein L28