HL_4V53_052

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

4V53|1|BB|A|613, 4V53|1|BB|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V53_052 not in the Motif Atlas

Homologous match to HL_5J7L_151

Geometric discrepancy: 0.1996

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

4V53|1|BB|C|611
4V53|1|BB|G|612
4V53|1|BB|A|613
4V53|1|BB|A|614
4V53|1|BB|U|615
4V53|1|BB|A|616
4V53|1|BB|G|617

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4