HL_4V53_057

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

4V53|1|BB|A|781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V53_057 not in the Motif Atlas

Homologous match to HL_4WF9_024

Geometric discrepancy: 0.2931

The information below is about HL_4WF9_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

4V53|1|BB|U|779
4V53|1|BB|G|780
4V53|1|BB|A|781
4V53|1|BB|A|782
4V53|1|BB|A|783
4V53|1|BB|G|784
4V53|1|BB|G|785

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2