HL_4V53_058

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

4V53|1|BB|U|827, 4V53|1|BB|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V53_058 not in the Motif Atlas

Homologous match to HL_5J7L_157

Geometric discrepancy: 0.0829

The information below is about HL_5J7L_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.3

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

4V53|1|BB|U|826
4V53|1|BB|U|827
4V53|1|BB|U|828
4V53|1|BB|A|829
4V53|1|BB|G|830
4V53|1|BB|G|831

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BL

50S ribosomal protein L15

Chain BW

50S ribosomal protein L27