HL_4V53_098

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V53_098 not in the Motif Atlas

Geometric match to HL_5B2T_003

Geometric discrepancy: 0.0867

The information below is about HL_5B2T_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_85603.1

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

304

Unit IDs

4V53|1|BB|C|2658
4V53|1|BB|G|2659
4V53|1|BB|A|2660
4V53|1|BB|G|2661
4V53|1|BB|A|2662
4V53|1|BB|G|2663

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BG

50S ribosomal protein L6