HL_4V53_173

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GGCGACGGUUGUCC

Length

14 nucleotides

Bulged bases

4V53|1|DB|A|1453, 4V53|1|DB|U|1458

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V53_173 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.0892

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V53|1|DB|G|1449
4V53|1|DB|G|1450
4V53|1|DB|C|1451
4V53|1|DB|G|1452
4V53|1|DB|A|1453
4V53|1|DB|C|1454
4V53|1|DB|G|1455
4V53|1|DB|G|1456
4V53|1|DB|U|1457
4V53|1|DB|U|1458
4V53|1|DB|G|1459
4V53|1|DB|U|1460
4V53|1|DB|C|1461
4V53|1|DB|C|1462

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DN

50S ribosomal protein L17