HL_4V53_177

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

4V53|1|DB|A|1616, 4V53|1|DB|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V53_177 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.1117

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

4V53|1|DB|C|1612
4V53|1|DB|G|1613
4V53|1|DB|A|1614
4V53|1|DB|C|1615
4V53|1|DB|A|1616
4V53|1|DB|C|1617
4V53|1|DB|A|1618
4V53|1|DB|G|1619

Current chains

Chain DB

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34

Chain DS

50S ribosomal protein L22