HL_4V53_190
3D structure
- PDB id
- 4V53 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.54 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases (A, C, G, U)
- 2250G
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V53_190 not in the Motif Atlas
- Homologous match to HL_5J7L_186
- Geometric discrepancy: 0.095
- The information below is about HL_5J7L_186
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V53|1|DB|C|2248
4V53|1|DB|U|2249
4V53|1|DB|G|2250
4V53|1|DB|G|2251
4V53|1|DB|G|2252
4V53|1|DB|G|2253
4V53|1|DB|C|2254
4V53|1|DB|G|2255
4V53|1|DB|G|2256
Current chains
- Chain DB
- 23S rRNA
Nearby chains
- Chain DM
- 50S ribosomal protein L16
- Chain DW
- 50S ribosomal protein L27
Coloring options: