HL_4V53_205

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

4V53|1|DB|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V53_205 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.1043

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V53|1|DB|G|2819
4V53|1|DB|A|2820
4V53|1|DB|A|2821
4V53|1|DB|G|2822
4V53|1|DB|A|2823
4V53|1|DB|C|2824
4V53|1|DB|G|2825
4V53|1|DB|A|2826
4V53|1|DB|C|2827

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DD

50S ribosomal protein L3

Chain DN

50S ribosomal protein L17