HL_4V54_052

3D structure

PDB id

4V54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

4V54|1|BB|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V54_052 not in the Motif Atlas

Homologous match to HL_5J7L_151

Geometric discrepancy: 0.5012

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

4V54|1|BB|C|611
4V54|1|BB|G|612
4V54|1|BB|A|613
4V54|1|BB|A|614
4V54|1|BB|U|615
4V54|1|BB|A|616
4V54|1|BB|G|617

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4