HL_4V54_115

3D structure

PDB id

4V54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

4V54|1|CA|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V54_115 not in the Motif Atlas

Geometric match to HL_6DTD_001

Geometric discrepancy: 0.3405

The information below is about HL_6DTD_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

4V54|1|CA|G|462
4V54|1|CA|U|463
4V54|1|CA|U|464
4V54|1|CA|A|465
4V54|1|CA|A|466
4V54|1|CA|U|467
4V54|1|CA|A|468
4V54|1|CA|C|469
4V54|1|CA|C|470

Current chains

Chain CA

16S rRNA

Nearby chains