HL_4V54_139

3D structure

PDB id

4V54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAUAUGAA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V54_139 not in the Motif Atlas

Homologous match to HL_5J7L_135

Geometric discrepancy: 0.1447

The information below is about HL_5J7L_135

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80241.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V54|1|DB|U|87
4V54|1|DB|G|88
4V54|1|DB|A|89
4V54|1|DB|U|90
4V54|1|DB|A|91
4V54|1|DB|U|92
4V54|1|DB|G|93
4V54|1|DB|A|94
4V54|1|DB|A|95

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DU

50S ribosomal protein L24

Chain DX

50S ribosomal protein L29