HL_4V54_157

3D structure

PDB id

4V54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

4V54|1|DB|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V54_157 not in the Motif Atlas

Homologous match to HL_7RQB_021

Geometric discrepancy: 0.438

The information below is about HL_7RQB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4V54|1|DB|U|641
4V54|1|DB|U|642
4V54|1|DB|A|643
4V54|1|DB|A|644
4V54|1|DB|C|645
4V54|1|DB|U|646
4V54|1|DB|G|647

Current chains

Chain DB

23S rRNA

Nearby chains

Chain D1

50S ribosomal protein L33

Chain D3

50S ribosomal protein L35