HL_4V55_087

3D structure

PDB id

4V55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4V55|1|BB|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V55_087 not in the Motif Atlas

Homologous match to HL_5J7L_186

Geometric discrepancy: 0.1391

The information below is about HL_5J7L_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V55|1|BB|C|2248
4V55|1|BB|U|2249
4V55|1|BB|G|2250
4V55|1|BB|G|2251
4V55|1|BB|G|2252
4V55|1|BB|G|2253
4V55|1|BB|C|2254
4V55|1|BB|G|2255
4V55|1|BB|G|2256

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B6

50S ribosomal protein RRF

Chain BM

50S ribosomal protein L16

Chain BW

50S ribosomal protein L27