HL_4V55_140

3D structure

PDB id

4V55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

4V55|1|DB|A|125, 4V55|1|DB|A|126, 4V55|1|DB|A|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V55_140 not in the Motif Atlas

Homologous match to HL_4WF9_003

Geometric discrepancy: 0.1522

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4V55|1|DB|G|123
4V55|1|DB|G|124
4V55|1|DB|A|125
4V55|1|DB|A|126
4V55|1|DB|A|127
4V55|1|DB|C|128

Current chains

Chain DB

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34

Chain DT

50S ribosomal protein L23