HL_4V55_173

3D structure

PDB id

4V55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GGCGACGGUUGUCC

Length

14 nucleotides

Bulged bases

4V55|1|DB|A|1453, 4V55|1|DB|U|1458, 4V55|1|DB|G|1459, 4V55|1|DB|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V55_173 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.101

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

4V55|1|DB|G|1449
4V55|1|DB|G|1450
4V55|1|DB|C|1451
4V55|1|DB|G|1452
4V55|1|DB|A|1453
4V55|1|DB|C|1454
4V55|1|DB|G|1455
4V55|1|DB|G|1456
4V55|1|DB|U|1457
4V55|1|DB|U|1458
4V55|1|DB|G|1459
4V55|1|DB|U|1460
4V55|1|DB|C|1461
4V55|1|DB|C|1462

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DN

50S ribosomal protein L17