HL_4V56_052

3D structure

PDB id

4V56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

4V56|1|BB|A|613, 4V56|1|BB|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V56_052 not in the Motif Atlas

Homologous match to HL_5J7L_151

Geometric discrepancy: 0.2147

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

4V56|1|BB|C|611
4V56|1|BB|G|612
4V56|1|BB|A|613
4V56|1|BB|A|614
4V56|1|BB|U|615
4V56|1|BB|A|616
4V56|1|BB|G|617

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4