HL_4V56_153

3D structure

PDB id

4V56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

4V56|1|DB|C|544, 4V56|1|DB|U|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V56_153 not in the Motif Atlas

Homologous match to HL_7A0S_017

Geometric discrepancy: 0.5507

The information below is about HL_7A0S_017

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

4V56|1|DB|G|543
4V56|1|DB|C|544
4V56|1|DB|U|545
4V56|1|DB|U|546
4V56|1|DB|A|547
4V56|1|DB|G|548
4V56|1|DB|G|549
4V56|1|DB|C|550

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DJ

50S ribosomal protein L13

Chain DQ

50S ribosomal protein L20

Chain DR

50S ribosomal protein L21