HL_4V57_044

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAUAC

Length

5 nucleotides

Bulged bases (A, C, G, U)

321U, 322A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V57_044 not in the Motif Atlas

Homologous match to HL_5J7L_143

Geometric discrepancy: 0.1591

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.2

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

4V57|1|BB|G|319
4V57|1|BB|A|320
4V57|1|BB|U|321
4V57|1|BB|A|322
4V57|1|BB|C|323

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BU

50S ribosomal protein L24