HL_4V57_071

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

4V57|1|BB|C|1493, 4V57|1|BB|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V57_071 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.1421

The information below is about HL_5J7L_170

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42228.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

4V57|1|BB|G|1492
4V57|1|BB|C|1493
4V57|1|BB|A|1494
4V57|1|BB|A|1495
4V57|1|BB|A|1496
4V57|1|BB|U|1497
4V57|1|BB|C|1498

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2