HL_4V57_111

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V57_111 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1109

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V57|1|CA|A|320
4V57|1|CA|A|321
4V57|1|CA|C|322
4V57|1|CA|U|323
4V57|1|CA|G|324
4V57|1|CA|A|325
4V57|1|CA|G|326
4V57|1|CA|A|327
4V57|1|CA|C|328
4V57|1|CA|A|329
4V57|1|CA|C|330
4V57|1|CA|G|331
4V57|1|CA|G|332
4V57|1|CA|U|333

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CP

30S ribosomal protein S16

Chain CT

30S ribosomal protein S20