HL_4V57_141

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V57_141 not in the Motif Atlas

Geometric match to HL_3SIU_002

Geometric discrepancy: 0.375

The information below is about HL_3SIU_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.3

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

4V57|1|DB|U|137
4V57|1|DB|U|138
4V57|1|DB|U|139
4V57|1|DB|C|140
4V57|1|DB|G|141
4V57|1|DB|A|142

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DT

50S ribosomal protein L23