HL_4V57_143

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases (A, C, G, U)

196A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V57_143 not in the Motif Atlas

Geometric match to HL_5J7L_139

Geometric discrepancy: 0.0936

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.3

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

4V57|1|DB|G|194
4V57|1|DB|A|195
4V57|1|DB|A|196
4V57|1|DB|A|197
4V57|1|DB|C|198
4V57|1|DB|A|199
4V57|1|DB|U|200
4V57|1|DB|C|201

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DL

50S ribosomal protein L15

Chain DZ

50S ribosomal protein L28