HL_4V57_151

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V57_151 not in the Motif Atlas

Homologous match to HL_4WF9_015

Geometric discrepancy: 0.1017

The information below is about HL_4WF9_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_85603.1

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

304

Unit IDs

4V57|1|DB|C|462
4V57|1|DB|G|463
4V57|1|DB|U|464
4V57|1|DB|G|465
4V57|1|DB|A|466
4V57|1|DB|G|467

Current chains

Chain DB

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34

Chain DE

50S ribosomal protein L4