HL_4V57_175

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases (A, C, G, U)

1535A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V57_175 not in the Motif Atlas

Homologous match to HL_5J7L_171

Geometric discrepancy: 0.2721

The information below is about HL_5J7L_171

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_29960.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

59

Unit IDs

4V57|1|DB|C|1533
4V57|1|DB|U|1534
4V57|1|DB|A|1535
4V57|1|DB|C|1536
4V57|1|DB|G|1537
4V57|1|DB|G|1538

Current chains

Chain DB

23S rRNA

Nearby chains