HL_4V5C_008

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5C_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0838

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V5C|1|AA|C|320
4V5C|1|AA|A|321
4V5C|1|AA|C|322
4V5C|1|AA|U|323
4V5C|1|AA|G|324
4V5C|1|AA|A|325
4V5C|1|AA|G|326
4V5C|1|AA|A|327
4V5C|1|AA|C|328
4V5C|1|AA|A|329
4V5C|1|AA|C|330
4V5C|1|AA|G|331
4V5C|1|AA|G|332
4V5C|1|AA|G|333

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S RIBOSOMAL PROTEIN S16

Chain AT

30S RIBOSOMAL PROTEIN S20