3D structure

PDB id
4V5C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CAGCCG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V5C_013 not in the Motif Atlas
Geometric match to HL_5J7L_143
Geometric discrepancy: 0.1799
The information below is about HL_5J7L_143
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.5
Basepair signature
cWW-F
Number of instances in this motif group
19

Unit IDs

4V5C|1|AA|C|522
4V5C|1|AA|A|523
4V5C|1|AA|G|524
4V5C|1|AA|C|525
4V5C|1|AA|C|526
4V5C|1|AA|G|527

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AL
30S RIBOSOMAL PROTEIN S12
Chain AX
MRNA

Coloring options:


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