HL_4V5C_039

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5C_039 not in the Motif Atlas

Homologous match to HL_2AKE_003

Geometric discrepancy: 0.5229

The information below is about HL_2AKE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33239.1

Basepair signature

cWW-R-R-tWH-R-R-R

Number of instances in this motif group

98

Unit IDs

4V5C|1|AY|G|53
4V5C|1|AY|U|54
4V5C|1|AY|U|55
4V5C|1|AY|C|56
4V5C|1|AY|G|57
4V5C|1|AY|A|58
4V5C|1|AY|U|59
4V5C|1|AY|U|60
4V5C|1|AY|C|61

Current chains

Chain AY

A-SITE PHE-TRNA PHE

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BQ

50S RIBOSOMAL PROTEIN L16

Chain BZ

50S RIBOSOMAL PROTEIN L25