HL_4V5C_052

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

4V5C|1|BA|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5C_052 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.0725

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V5C|1|BA|G|382
4V5C|1|BA|U|383
4V5C|1|BA|U|384
4V5C|1|BA|C|385
4V5C|1|BA|G|386
4V5C|1|BA|U|387
4V5C|1|BA|G|388
4V5C|1|BA|G|389
4V5C|1|BA|A|390
4V5C|1|BA|G|391
4V5C|1|BA|C|392

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B1

50S RIBOSOMAL PROTEIN L28

Chain BP

50S RIBOSOMAL PROTEIN L15