HL_4V5C_075

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCAUGGACGAG

Length

11 nucleotides

Bulged bases

4V5C|1|BA|A|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5C_075 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.5144

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_93135.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

4V5C|1|BA|C|1450|||A
4V5C|1|BA|C|1451
4V5C|1|BA|A|1452
4V5C|1|BA|U|1453
4V5C|1|BA|G|1455
4V5C|1|BA|G|1456
4V5C|1|BA|A|1457
4V5C|1|BA|C|1458
4V5C|1|BA|G|1459
4V5C|1|BA|A|1460
4V5C|1|BA|G|1461

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BR

50S RIBOSOMAL PROTEIN L17