HL_4V5C_092

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4V5C|1|BA|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5C_092 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.0969

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5C|1|BA|C|2248
4V5C|1|BA|U|2249
4V5C|1|BA|G|2250
4V5C|1|BA|G|2251
4V5C|1|BA|G|2252
4V5C|1|BA|G|2253
4V5C|1|BA|C|2254
4V5C|1|BA|G|2255
4V5C|1|BA|G|2256

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain B0

50S RIBOSOMAL PROTEIN L27

Chain BQ

50S RIBOSOMAL PROTEIN L16