HL_4V5C_106

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGCGUCAAGCC

Length

11 nucleotides

Bulged bases

4V5C|1|BA|U|2796

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5C_106 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.235

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

4V5C|1|BA|G|2792
4V5C|1|BA|G|2793
4V5C|1|BA|C|2794
4V5C|1|BA|G|2795
4V5C|1|BA|U|2796
4V5C|1|BA|C|2799
4V5C|1|BA|A|2801
4V5C|1|BA|A|2801|||A
4V5C|1|BA|G|2802
4V5C|1|BA|C|2803
4V5C|1|BA|C|2804

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains